MmuEX0036737 @ mm9
Exon Skipping
Gene
ENSMUSG00000032827 | Ppp1r9a
Description
protein phosphatase 1, regulatory (inhibitor) subunit 9A [Source:MGI Symbol;Acc:MGI:2442401]
Coordinates
chr6:5050432-5063830:+
Coord C1 exon
chr6:5050432-5050587
Coord A exon
chr6:5061000-5061053
Coord C2 exon
chr6:5063601-5063830
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTCAATTTTCAGTTG
3' ss Score
10.74
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACTGGAGAGTATGCCACTGATGAAGAAGAGGATGAGGGCGGGCCTATTCTTCCTAGTGGTGACGTGGCCATTGAGGTCTTTGAGCTGCCTGAGAACGAGGACATGTTTTCCCCATCTGACCTGGACACAAGCAAGCTCAGCCACAAGTTCAAAGAG
Seq A exon
TTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACCAAG
Seq C2 exon
CTTCAAGCAGCCGAAAATGAGAAAGTAAGGTGGGAACTAGAAAAGAACCAACTGCAACAGAATATAGAAGAGAATAAAGAACGGATGCTGAAGTTGGAGAGCTACTGGATCGAGGCTCAGACATTATGTCATACGGTGAATGAGCATCTCAAAGAGACTCAGAGCCAGTACCAAGCCCTGGAAAAGAAATACAACAAAGCAAAGAAGCTGATCAAAGACTTCCAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032827_MULTIEX3-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.063 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAGCTCAGCCACAAGTT
R:
TGAGCCTCGATCCAGTAGCTC
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: