HsaEX6009068 @ hg19
Exon Skipping
Gene
ENSG00000158528 | PPP1R9A
Description
protein phosphatase 1, regulatory subunit 9A [Source:HGNC Symbol;Acc:14946]
Coordinates
chr7:94855273-94879567:+
Coord C1 exon
chr7:94855273-94855428
Coord A exon
chr7:94876785-94876838
Coord C2 exon
chr7:94879338-94879567
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTCAATTTTCAGTTG
3' ss Score
10.38
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACAGGAGAATATGCCACAGATGAAGAAGAAGATGAGGTAGGACCTGTCCTTCCTGGCAGCGACATGGCCATTGAAGTCTTTGAGCTGCCTGAGAATGAGGACATGTTTTCCCCATCAGAACTGGACACAAGCAAGCTCAGTCACAAGTTCAAAGAG
Seq A exon
TTGCAAATCAAACATGCAGTTACAGAAGCAGAGATTCAAAAATTGAAGACCAAG
Seq C2 exon
CTGCAGGCAGCAGAAAATGAGAAAGTGAGGTGGGAACTAGAAAAAACCCAACTCCAACAAAACATAGAAGAGAATAAGGAAAGAATGTTGAAGTTGGAAAGCTACTGGATTGAGGCCCAAACATTATGCCACACAGTGAATGAGCATCTCAAAGAGACTCAAAGCCAGTATCAGGCCTTGGAAAAGAAATACAACAAGGCAAAGAAGTTGATCAAGGATTTTCAACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158528-'13-15,'13-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.624 A=0.069 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGCTCAGTCACAAGTTCA
R:
TGGGCCTCAATCCAGTAGCTT
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)