RnoEX0068937 @ rn6
Exon Skipping
Gene
ENSRNOG00000052113 | Ppp1r9b
Description
protein phosphatase 1, regulatory subunit 9B [Source:RGD Symbol;Acc:632281]
Coordinates
chr10:82811647-82814630:+
Coord C1 exon
chr10:82811647-82811799
Coord A exon
chr10:82811882-82811935
Coord C2 exon
chr10:82814401-82814630
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTGCCACCTTATGTCTGCAGCTC
3' ss Score
7.55
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ACAGGAGAGTATGCCACCGATGAAGATGAAGAACTGAGCCCGACATTTCCAGGGGGTGAAATGGCCATCGAGGTGTTTGAACTAGCAGAGAATGAGGATGCACTGTCCCCTGTGGAGATGGAGCCTGAAAAGCTGGTGCACAAGTTCAAGGAG
Seq A exon
CTCCAGATCAAGCATGCTGTCACTGAAGCGGAAATCCAGCAGCTGAAGCGGAAG
Seq C2 exon
TTGCAGAGTCTGGAGCAGGAGAAAGGGCGCTGGCGGGTGGAGAAGGCCCAGCTGGAGCAGAGTGTGGAGGAGAATAAGGAGCGGATGGAGAAGCTAGAAGGCTACTGGGGTGAGGCCCAGAGCCTGTGCCAGGCTGTGGATGAGCACCTGCGGGAGACTCAGGCCCAGTATCAGGCCCTGGAGCGAAAGTACAGCAAGGCCAAGCGTCTCATCAAGGACTACCAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052113-'17-13,'17-10,18-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=0.056 C2=0.156
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCCTGAAAAGCTGGTG
R:
TCTAGCTTCTCCATCCGCTCC
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]