MmuEX6095857 @ mm10
Exon Skipping
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123483647-123486427:-
Coord C1 exon
chr4:123486329-123486427
Coord A exon
chr4:123484027-123484179
Coord C2 exon
chr4:123483647-123483735
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTTTCTATTTCCTGTTACAGAAA
3' ss Score
10.4
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTCATGGACTTAAGGACTCGATACACAGCTTTGGTGACATTAACAACTCAGCATGTAAAATATATCAGTGATGCTCTCCGGCGGTTGGAAGAGGAAGAG
Seq A exon
AAAGTAGTAGAAGAGGAAAAACAAGAACATGTGGAGAAGGTTAAAGACCTTTTGGGTTGGGTGTCTACTCTGGCAAGAAATACACAAGGAACAACTACCTCATCTCACACTAGTGCATCTGCAGACATTGAGAAGGCCATTTTGGAGCAGCAG
Seq C2 exon
GTTCTGGCAGAAGAGTTGACAACCAAGAAAGAACAAGTTTCTGAGGCCATTAAAACTTCACAGATCTTCTTAGCCAAGCATGGCCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-'69-61,'69-58,70-61=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.400 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTAAGGACTCGATACACA
R:
CCATGCTTGGCTAAGAAGATCTGT
Band lengths:
178-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types