GgaEX6025272 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5652797-5653569:+
Coord C1 exon
chr23:5652797-5652895
Coord A exon
chr23:5653099-5653251
Coord C2 exon
chr23:5653481-5653569
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCCTCGATTTGCAGAAA
3' ss Score
9.91
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TTCATGGACCTGCGCACCCGGTACACAGCCCTGGTAACGCTGACCACGCAGCACGTCAAGTACATCAGCGATGCTCTGCGGCGGCTGGAGGAGGAGGAG
Seq A exon
AAAGTGGTGGAGGAGGAAAAGCAAGAGCACGTGGACAAGGTGAAGGAGCTCCTGGGCTGGGCTGTGGGCCTGAAGCAGAGCGTGCAAGGCAGAACGGCTGCTGCCCAGAGCAGGGAGCTGGGAGACATCAAGAAGTCCATCTCAGAGCAGCAG
Seq C2 exon
GCCCTCAATGAGGAGCTGGCTGCAAAGAAGGAACAGGTCTCTGAGGCCATCAAAACGTCACAAATCTTCCTGGCAAAGCACAACCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'39-36,'39-35,40-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.294 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
PF0043516=Spectrin=PU(40.7=90.2)
C2:
PF0043516=Spectrin=FE(25.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGGACCTGCGCACC
R:
GTGGTTGTGCTTTGCCAGGAA
Band lengths:
186-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]