DreEX0044239 @ danRer10
Exon Skipping
Gene
ENSDARG00000028533 | macf1a
Description
microtubule-actin crosslinking factor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3606]
Coordinates
chr19:35565522-35568401:-
Coord C1 exon
chr19:35568303-35568401
Coord A exon
chr19:35566522-35566641
Coord C2 exon
chr19:35565522-35565613
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCTCTGTTTTTGCGCTATAGAAA
3' ss Score
7.01
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTCATGGATTTACGCACTCGCTACACAGCTCTGGTTACCCTGACAACGCAACATGTCAAGTATATTAGTGATGCGCTACGAAGACTGGAGGAGGAGGAG
Seq A exon
AAAGAAGTGGAAGAGGAGAGACAGGCCCGAGTGGGGCAGGTCTCAGACCTGCTCGGGTGGGTCAAGGGCCTACAGGAGCGCACAGGCAGATCTGCAGAGCCATCACTTGTCGCACATCAG
Seq C2 exon
GCTATTAGTGAGCAGCTAGCGGCTAAAAAAGAGGAAGTTGCTGAAGCCATCAGGAGCACCCAAGTCTTCCTGATGTCAAAACAGGCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028533-'38-45,'38-44,39-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.406 C2=0.018
Domain overlap (PFAM):
C1:
PF086146=ATG16=FE(19.3=100),PF112213=Med21=PU(47.5=85.3)
A:
PF086146=ATG16=FE(23.4=100),PF112213=Med21=PD(50.8=75.6),PF087375=Rgp1=PU(15.3=48.8)
C2:
PF086146=ATG16=FE(18.1=100),PF087375=Rgp1=FE(23.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGATTTACGCACTCGCT
R:
TGCTGGCCTGTTTTGACATCA
Band lengths:
189-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]