RnoEX6023205 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141170059-141170961:-
Coord C1 exon
chr5:141170863-141170961
Coord A exon
chr5:141170433-141170585
Coord C2 exon
chr5:141170059-141170147
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTTTCTATTTCCTGTTACAGAAA
3' ss Score
10.4
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTCATGGACTTGAGGACTCGATACACAGCTTTGGTGACATTAACGACTCAGCATGTAAAATATATCAGTGATGCTCTCCGGCGGTTGGAAGAAGAAGAG
Seq A exon
AAAGTGGTAGAAGAGGAAAAACAAGAACATGTGGAGAAGGTTAAAGACCTTTTGGGTTGGGTGTCTACTCTGGCGAGAAATACACAAGGAACAACTACCTCATCTCGCACTAGTGCATCCACAGACATTGAGAAGGCCATTTTGGAACAGCAG
Seq C2 exon
GTTCTGGCAGAAGAGCTGACAACCAAGAAAGAACAAGTTTCTGAGGCCATTAAAACGTCACAAATCTTCTTAGCCAAGCATGGTCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047-'55-54,'55-53,56-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.398 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGGACTTGAGGACTCGA
R:
GCTTGGCTAAGAAGATTTGTGACG
Band lengths:
178-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]