BtaEX6018667 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107310368-107312480:-
Coord C1 exon
chr3:107312382-107312480
Coord A exon
chr3:107310759-107310911
Coord C2 exon
chr3:107310368-107310456
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTTCTATTTCCTCTTCTAGAAA
3' ss Score
11.1
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTCATGGACTTAAGGACTCGCTACACAGCATTGGTGACCTTAACAACTCAGCATGTGAAATACATCAGTGATGCGCTCCGGCGGCTGGAGGAGGAGGAG
Seq A exon
AAAGTGGTAGAGGAGGAAAAACAGGAGCATGTGGAGAAGGTTAAAGAACTTTTGGGCTGGGTATCTACCCTGGCAAAGAATACACAAAGCAAAGCTACCTCACCCCAGACCAAAGAACCAACAGACATTGAAAAGGCTATTTTAGAACAACAG
Seq C2 exon
GTTCTGGCAGAGGAGCTGACAACCAAGAGGGAGCAAGTCTCTGAGGCCGTTAAAACTTCACAGATCTTCTTGGCCAAGCACGGTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024-'37-39,'37-38,38-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.471 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGACTTAAGGACTCGCT
R:
TTGTGACCGTGCTTGGCC
Band lengths:
187-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]