MmuEX6095857 @ mm9
Exon Skipping
Gene
ENSMUSG00000028649 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:MGI Symbol;Acc:MGI:108559]
Coordinates
chr4:123160890-123163670:-
Coord C1 exon
chr4:123163572-123163670
Coord A exon
chr4:123161270-123161422
Coord C2 exon
chr4:123160890-123160978
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTTTCTATTTCCTGTTACAGAAA
3' ss Score
10.4
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTCATGGACTTAAGGACTCGATACACAGCTTTGGTGACATTAACAACTCAGCATGTAAAATATATCAGTGATGCTCTCCGGCGGTTGGAAGAGGAAGAG
Seq A exon
AAAGTAGTAGAAGAGGAAAAACAAGAACATGTGGAGAAGGTTAAAGACCTTTTGGGTTGGGTGTCTACTCTGGCAAGAAATACACAAGGAACAACTACCTCATCTCACACTAGTGCATCTGCAGACATTGAGAAGGCCATTTTGGAGCAGCAG
Seq C2 exon
GTTCTGGCAGAAGAGTTGACAACCAAGAAAGAACAAGTTTCTGAGGCCATTAAAACTTCACAGATCTTCTTAGCCAAGCATGGCCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028649-'43-42,'43-41,44-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.404 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTTAAGGACTCGATACACA
R:
CCATGCTTGGCTAAGAAGATCTGT
Band lengths:
178-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: