MmuEX6099257 @ mm9
Exon Skipping
Gene
ENSMUSG00000026784 | Pdss1
Description
prenyl (solanesyl) diphosphate synthase, subunit 1 [Source:MGI Symbol;Acc:MGI:1889278]
Coordinates
chr2:22757273-22768261:+
Coord C1 exon
chr2:22757273-22757393
Coord A exon
chr2:22762315-22762445
Coord C2 exon
chr2:22768120-22768261
Length
131 bp
Sequences
Splice sites
3' ss Seq
AGAAGGAAACTGTGTTTCAGGAG
3' ss Score
1.95
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTTTCATCAAAGGACACCAGCAATGTGCAGTTGTCGTCAAACTCAGAGTGGTGAGAAATACAGTGATCCTTTTAAACTTGGCTGGAGAGACTTGAAAGGTCTGTATGAAGACATTAGAAAG
Seq A exon
GAGCTGCACATCTCCACCAGAGAACTAAAGGACATGTCCGAATACTACTTCGATGGCAAAGGAAAAGCCTTTAGACCGATTATTGTGGTGCTAATGGCCCGAGCGTGTAATATTCATCATAATAATGCCCG
Seq C2 exon
AGAGATGCAAGCCAGCCAGCGCTCCATAGCCTTAGTTGCAGAAATGATCCACACTGCTACTCTGGTTCATGATGACGTTATTGATGATGCAAGTTCTCGAAGAGGAAAACATACAGTTAATAAAATCTGGGGTGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026784-'6-7,'6-5,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.006 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
PF0034812=polyprenyl_synt=PU(13.7=81.8),PF073076=HEPPP_synt_1=PU(5.9=18.2)
C2:
PF0034812=polyprenyl_synt=FE(17.9=100),PF073076=HEPPP_synt_1=FE(34.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGACACCAGCAATGTGC
R:
TCTCACCCCAGATTTTATTAACTGT
Band lengths:
251-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: