MmuEX6099257 @ mm10
Exon Skipping
Gene
ENSMUSG00000026784 | Pdss1
Description
prenyl (solanesyl) diphosphate synthase, subunit 1 [Source:MGI Symbol;Acc:MGI:1889278]
Coordinates
chr2:22901753-22912741:+
Coord C1 exon
chr2:22901753-22901873
Coord A exon
chr2:22906795-22906925
Coord C2 exon
chr2:22912600-22912741
Length
131 bp
Sequences
Splice sites
3' ss Seq
AGAAGGAAACTGTGTTTCAGGAG
3' ss Score
1.95
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTTTCATCAAAGGACACCAGCAATGTGCAGTTGTCGTCAAACTCAGAGTGGTGAGAAATACAGTGATCCTTTTAAACTTGGCTGGAGAGACTTGAAAGGTCTGTATGAAGACATTAGAAAG
Seq A exon
GAGCTGCACATCTCCACCAGAGAACTAAAGGACATGTCCGAATACTACTTCGATGGCAAAGGAAAAGCCTTTAGACCGATTATTGTGGTGCTAATGGCCCGAGCGTGTAATATTCATCATAATAATGCCCG
Seq C2 exon
AGAGATGCAAGCCAGCCAGCGCTCCATAGCCTTAGTTGCAGAAATGATCCACACTGCTACTCTGGTTCATGATGACGTTATTGATGATGCAAGTTCTCGAAGAGGAAAACATACAGTTAATAAAATCTGGGGTGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026784-'7-12,'7-6,9-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0034812=polyprenyl_synt=PU(22.1=81.8),PF073076=HEPPP_synt_1=PU(6.0=18.2)
C2:
PF0034812=polyprenyl_synt=FE(28.8=100),PF073076=HEPPP_synt_1=FE(35.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGACACCAGCAATGTGC
R:
TCTCACCCCAGATTTTATTAACTGT
Band lengths:
251-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types