DreEX0054528 @ danRer10
Exon Skipping
Gene
ENSDARG00000017910 | pdss1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4430]
Coordinates
chr24:5991606-5992633:-
Coord C1 exon
chr24:5992507-5992633
Coord A exon
chr24:5991838-5991968
Coord C2 exon
chr24:5991606-5991747
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTGTGATCTTTCTGATTCAGCAG
3' ss Score
6.54
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GCACAGGTGTAAATATCTGTACTCAACGCCCCGAGTCAGCTGCAGTTTACACAGTGATGCAAAGTTAAAAGATCCTTTCTCACTCGTACAAAAGGACTTGCAAAATATATATGATGACATAAAACAG
Seq A exon
CAGCTGCTGGTGTCTAAAGCAGAGCTGAAAGCGCTGTGTGATTATTACTTTGACGGGAAGGGAAAAGCTTTTCGACCAATGATTGTGATCTTAATGGCTCGAGCTTGTAATGTCCACAGCAATAAAGAGGG
Seq C2 exon
GGTTTTGCTACCGGCGCAGCGCTCAATCGCTATGATCTCTGAGATGATCCACACCGCCAGCCTGGTGCATGATGACGTCATTGATGACTCGGACAAGAGACGTGGGAAAAACACCATTAATAATGTGTGGGGAGAGAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017910-'4-6,'4-3,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF0034812=polyprenyl_synt=PU(13.4=79.5)
C2:
PF0034812=polyprenyl_synt=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTGTACTCAACGCCCCGA
R:
TCTCCCCACACATTATTAATGGTGT
Band lengths:
249-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]