RnoEX0064697 @ rn6
Exon Skipping
Gene
ENSRNOG00000048849 | Pdss1
Description
decaprenyl diphosphate synthase subunit 1 [Source:RGD Symbol;Acc:2319976]
Coordinates
chr17:90053666-90065995:-
Coord C1 exon
chr17:90065875-90065995
Coord A exon
chr17:90060261-90060391
Coord C2 exon
chr17:90053666-90053807
Length
131 bp
Sequences
Splice sites
3' ss Seq
AGAGGGAAACTGTATTTCAGGAA
3' ss Score
2.83
5' ss Seq
CCGGTCAGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTTTCATCAAAGGACACCAGCAATGTGCTGTTGTAGTCAAACTCAGAGTGGTGAGAAATACAGTGATCCTTTTAAACTTGGCTGGAGAGACTTGAAAGGTCTATATGAAGACATTAGAAAG
Seq A exon
GAACTGCACATCTCCACCAGAGAACTGAAGGACATGTCTGAATACTACTTCGATGGCAAAGGAAAAGCCTTTAGGCCGATTATTGTGGTGCTAATGGCCCGAGCGTGTAATATTCATCATAATAACTCCCG
Seq C2 exon
AGAGATGCAAGCCAGACAGCGCTCCGTAGCCTTAGTTGCAGAAATGATCCACACTGCTACTCTGGTTCATGATGACGTTATTGACGATGCAAGTTCTCGAAGAGGAAAACATACAGTTAATAAAGTCTGGGGTGAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048849-'2-5,'2-2,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF0034812=polyprenyl_synt=PU(13.7=81.8),PF073076=HEPPP_synt_1=PU(5.9=18.2)
C2:
PF0034812=polyprenyl_synt=FE(17.9=100),PF073076=HEPPP_synt_1=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGACACCAGCAATGTGC
R:
CTTTTGCTCACCCCAGACTTT
Band lengths:
256-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]