BtaEX6063916 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006529 | PDSS1
Description
Bos taurus prenyl (decaprenyl) diphosphate synthase, subunit 1 (PDSS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100331]
Coordinates
chr13:18201961-18216450:-
Coord C1 exon
chr13:18216330-18216450
Coord A exon
chr13:18213337-18213467
Coord C2 exon
chr13:18201961-18202102
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCAGAGAAACTTTGTTTCAGGAG
3' ss Score
1.44
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTTCCATCACACGACGCCAGTAGCTTGCTGCTTCAGTGAAACACTGAGCGGTGAGAAGTACACCGACCCTTTTAAGATTGGCTGGAGAGACTTGAAAGGTCTCTATGAGGACATCAGGAAG
Seq A exon
GAGCTCTTCATATCTACAGCAGAACTCAGGGAAATGTCTGAATACCATTTTGATGGAAAAGGAAAAGCCTTTCGACCAATTATTGTGGTGCTAATGGCCCGAGCCTGTAACATTCATCACAATAACGCCCG
Seq C2 exon
AAATGTGCAAGCAAGCCAGCGTGCCATTGCCTTAATTGCAGAAATGATCCATACTGCCAGTCTGGTGCATGACGATATCATTGATGATGCAAGTTCTCGGAGAGGAAAACACACCGTTAATAAGATCTGGGGTGAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006529-'4-11,'4-5,8-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0034812=polyprenyl_synt=PU(13.7=81.8)
C2:
PF0034812=polyprenyl_synt=FE(17.9=100)
Main Skipping Isoform:
ENSBTAT00000008576fB5126
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATCACACGACGCCAGTA
R:
CCCCAGATCTTATTAACGGTGTGT
Band lengths:
252-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]