GgaEX6018624 @ galGal4
Exon Skipping
Gene
ENSGALG00000007559 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr2:15989433-15997962:-
Coord C1 exon
chr2:15997839-15997962
Coord A exon
chr2:15997345-15997475
Coord C2 exon
chr2:15989433-15989574
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCATCTTTTCCTTTCTGTAGGAG
3' ss Score
10.6
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTCCATCATACAAGTACAGCCCTCATGTGCAGCTGCAGTAAGACAGTTAGTGATGAAAAATACCAAGACCCTTTTCAACTTGGCAGAAAAGACTTGAAGAATCTCTATGAGGATATTAAAAAG
Seq A exon
GAGTTACTTGTATCTACTGCTGAACTTAGGGAAATGTGTGAATATTACTTTGATGGGAAAGGAAAGGCCTTTCGACCAATGATTGTGGTGCTAATGGCGAGGGCTTGCAACATTCACCATAGCAATTCCAG
Seq C2 exon
GGAGGTGCAAGCAAGCCAGCGCTCTGTGGCCATAATTGCAGAGATGATCCACACGGCTAGCCTCGTTCATGACGATGTTATTGATGATGCAAATTCTCGCAGAGGAAAAATGACAGTCAATCAGATCTGGGGAGAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559-'7-13,'7-3,8-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0034812=polyprenyl_synt=PU(13.7=81.8),PF073076=HEPPP_synt_1=PU(5.3=15.9)
C2:
PF0034812=polyprenyl_synt=FE(17.9=100),PF073076=HEPPP_synt_1=FE(35.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGTACAGCCCTCATGTGC
R:
CTTCCTCTCTCCCCAGATCTGA
Band lengths:
256-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]