MmuEX6099735 @ mm9
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26281971-26284473:-
Coord C1 exon
chr2:26284335-26284473
Coord A exon
chr2:26283660-26283905
Coord C2 exon
chr2:26281971-26282068
Length
246 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCATTGATCCTGTAGACT
3' ss Score
8.4
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AGATGATACCCACAAAGTAGATGTTATTAACTTTGCACAGAACAAAGCAACAAAATGTTTGCAGAATGAAAGTTTAATTGATAAAGAGTCTGCAAGTCTTCTTTGGAAATTCATTATTCTGTTATGCAGACAGAATGGG
Seq A exon
ACTGTTGTGGGAACAGACATTGCAGAGCTTTTGTTACGGGACCATAGAACTGTATGGCTTCCTGGGAAGTCACCCAATGAGGCAAACCTGATAGATTTTACCAATGAGGCTGTGGAACAAGTGGAAGAGGAGGAGTCAGGGGAGGCCCAGCTCTCATTTCTCACAGACAGTCAGACAGTGACCACCAGCGTGCTGGAGAAGGAGACTGAGCGGTTCCGTGAGCTCTTGCTGTATGGCCGGAAGAAG
Seq C2 exon
GATGCTCTGGAGTCTGCCATGAAAAATGGCTTATGGGGTCATGCTCTTCTGCTTGCAAGTAAGATGGACAGCCGGACACATGCCCGTGTCATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(44.7=100)
A:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.2=13.4)
C2:
PF129312=Sec16_C=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGATACCCACAAAGTAGATGT
R:
CTGGTCATGACACGGGCATG
Band lengths:
237-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: