BtaEX6047207 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103950581-103952288:-
Coord C1 exon
chr11:103952150-103952288
Coord A exon
chr11:103951559-103951798
Coord C2 exon
chr11:103950581-103950678
Length
240 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTTGTCCCTCGCAGACC
3' ss Score
12.39
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGATGAGACCCATAAAGTGGATGTTATTAATTTTGCACAGAACAAGGCTACAAAGTGTTTGCAGAATGAAAACTTAATAGACAAAGAGTCTGCGAGTCTTCTCTGGAGCTTTATTGTCCTGCTGTGCAGGCAGAACGGG
Seq A exon
ACCGTGGTGGGCACAGACATTGCAGAGCTCTTGTTACGAGACCACCGAACCGTGTGGCTTCCTGGGAAGTCGCCGAATGAGGCCAACCTGATCGATTTCACCAACGAGGCTGTGGAGCAGGCGGAGGAGGAGGAGTCCGGCGAGGCCCAGCTCTCATTCCTCACGGACAGTCAGGCCGCCAGCACCCTCGAGAAAGACACAGAGCGGTTCCGGGAGCTGCTGCTCTATGGCCGCAAGAAG
Seq C2 exon
GACGCCTTAGAGTCTGCAATGAAGAATGGCTTGTGGGGTCACGCCCTGCTACTTGCCAGTAAGATGGATAGCCGGACGCACGCCAGAGTCATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.287 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(44.7=100)
A:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.2=13.8)
C2:
PF129312=Sec16_C=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGATGTTATTAATTTTGCACAGA
R:
CTGGTCATGACTCTGGCGTG
Band lengths:
222-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]