GgaEX0002965 @ galGal4
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr17:7861385-7862410:+
Coord C1 exon
chr17:7861385-7861523
Coord A exon
chr17:7861769-7862011
Coord C2 exon
chr17:7862313-7862410
Length
243 bp
Sequences
Splice sites
3' ss Seq
TTCCCCGACACACACAATAGACT
3' ss Score
1.51
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGATGACACCCATAAAGTGGACGTTATTAACTTTGCACAAAATAAAGCTACACAATGTTTTAAAAATGAAAATTTAATTGACAAAGAATCTGCAAGTCTGCTTTGGGACTTCATTGTACTGCTGTGCAGGCAGAACGGG
Seq A exon
ACTGTTGTGGGAACAGACCTGGCTGAACTTCTGCTCCGAGATCATAAAACAGTGTGGCTTCCTGGGAAGTCCCCTAATGAAGCAAACTTAATTGATTTCACTAATGAGGCTTTGGAACAAGTAGAGGAGGAATCTGGTGAAGCCCAGCTCTCATTTCTCACTGATAGTCTTATAACCACAATTGACAGTCTGGAGAAAGAAACAGAGAGATTCAGAGAGTTGCTGCTTTATGGACGTAAGAAG
Seq C2 exon
GATGCTTTGGAATCAGCCATGAAGCATGGCTTATGGGGTCATGCTCTGCTACTTGCCAGCAAGATGGACAATAGAACGCATGCAAGAGTTATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(44.7=100)
A:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.1=13.6)
C2:
PF129312=Sec16_C=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGACGTTATTAACTTTGCACA
R:
TGGTCATAACTCTTGCATGCGT
Band lengths:
221-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]