RnoEX6015987 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3873132-3875307:-
Coord C1 exon
chr3:3875169-3875307
Coord A exon
chr3:3874464-3874709
Coord C2 exon
chr3:3873132-3873229
Length
246 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTGTTAATCCTGTAGACC
3' ss Score
8.53
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
AGATGACACTCACAAAGTAGATGTTATTAACTTTGCACAAAACAAAGCGACAAAATGTTTGCAGAATGAAAGTTTAATTGACAAAGAGTCTGCAAGTCTTCTTTGGAACTTCATTATTCTGTTATGCAGACAGAATGGG
Seq A exon
ACCGTCGTGGGAACAGACATCGCAGAGCTCTTGTTACGGGACCATAGAACTGTGTGGCTTCCTGGGAAGTCACCCAACGAGGCAAACCTGATAGATTTTACCAATGAGGCTGTGGAGCAAGTGGAAGAGGAGGAGTCAGGGGAGGCCCAGCTCTCATTTCTCACAGACAGTCAGACAGTGACCAGCAGTGTGCTGGAGAAGGAGACTGAGCGGTTCCGTGAACTCTTGCTGTACGGTCGGAAGAAG
Seq C2 exon
GATGCTCTGGAGTCTGCCATGAAAAATGGCTTATGGGGTCACGCCCTGCTGCTTGCAAGTAAGATGGACAGCCGGACACATGCCCGTGTCATGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.171 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(44.7=100)
A:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.2=13.4)
C2:
PF129312=Sec16_C=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGACACTCACAAAGTAGATGT
R:
CTGGTCATGACACGGGCATG
Band lengths:
237-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]