MmuEX6100076 @ mm10
Exon Skipping
Gene
ENSMUSG00000039844 | Rapgef1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:MGI Symbol;Acc:MGI:104580]
Coordinates
chr2:29732827-29734284:+
Coord C1 exon
chr2:29732827-29732919
Coord A exon
chr2:29733577-29733762
Coord C2 exon
chr2:29734200-29734284
Length
186 bp
Sequences
Splice sites
3' ss Seq
CAAGTGCCCTTGGCCCTTAGCCT
3' ss Score
4.03
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTACGAGAAGTTCTCTCCCTTTGCTGACACGTTCAAGAAGCGAGTGAGCAAGAACACATTCTTTGTGCTGGTTCGAGTGGTGGATGAGCTCTG
Seq A exon
CCTGGTGGAGCTGACAGAGGAGATCCTGAAGCTGCTGATGGAGCTGGTCTTCCGCCTAGTGTGCAGCGGAGAGCTCAGCCTGGCCAGAGTCCTCCGGAAGAACATTCTGGACAAGGTGGACCAGAAGAAGCTGCTCAGGTGTGCCCATTCCGACCAGCCTCTGGCAGCCAGGGGTGTTGCAGCCAG
Seq C2 exon
GCCAGGAACCTTGCATGATTTCCACAGCCACGAGATAGCTGAGCAGCTGACACTGCTGGATGCCGAGCTTTTCTACAAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039844-'46-59,'46-56,51-59
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(31.6=100)
A:
PF0061815=RasGEF_N=PD(18.4=28.6)
C2:
PF0061714=RasGEF=PU(12.9=79.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTCTCCCTTTGCTGACAC
R:
CTCTATCTTGTAGAAAAGCTCGGCA
Band lengths:
170-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types