RnoEX0073995 @ rn6
Exon Skipping
Gene
ENSRNOG00000014316 | Rapgef1
Description
Rap guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:619793]
Coordinates
chr3:8299415-8300926:+
Coord C1 exon
chr3:8299415-8299507
Coord A exon
chr3:8300227-8300412
Coord C2 exon
chr3:8300842-8300926
Length
186 bp
Sequences
Splice sites
3' ss Seq
CTGAGTGCCCTTGCCCTTAGCCT
3' ss Score
5.64
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTACGAGAAGTTCTCTCCCTTTGCTGACACATTCAAGAAGCGAGTGAGCAAGAACACATTCTTCGTGCTGGTGCGGGTGGTGGACGAGCTCTG
Seq A exon
CCTGGTGGAGCTGACAGAGGAGATCCTGAAGCTGCTGATGGAGCTAGTCTTCCGCCTAGTGTGCAGTGGAGAGCTCAGCTTGGCCAGGGTACTCCGAAAGAACATTCTGGACAAGGTGGACCAGAAGAAGCTGCTCAGGTGTGCCCATTCCGACCAGCCTTTGGCAGCCAGGGGTGTTGCAGCCAG
Seq C2 exon
GCCAGGAACCTTGCATGATTTCCACAGCCACGAGATAGCTGAACAGCTGACACTGCTGGATGCCGAGCTTTTCTATAAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014316_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(31.6=100)
A:
PF0061815=RasGEF_N=PD(18.4=28.6)
C2:
PF0061714=RasGEF=PU(12.9=79.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGTTCTCTCCCTTTGCTGA
R:
ATCTTATAGAAAAGCTCGGCATCCA
Band lengths:
170-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]