GgaEX6015267 @ galGal3
Exon Skipping
Gene
ENSGALG00000003712 | RAPGEF1
Description
NA
Coordinates
chr17:6874866-6875504:-
Coord C1 exon
chr17:6875400-6875504
Coord A exon
chr17:6875108-6875293
Coord C2 exon
chr17:6874866-6874950
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCGGCTCTGCCATCTTTCAGCTT
3' ss Score
8.76
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTTGCAACCAACATATGAGAAGTTTTGCCACTTCCCAGACACGTTTAAGAAGCGAGTCAGTAAGAACACCTTCTTCGTGCTGGTGAGAGTGGTGGATGAGCTGTG
Seq A exon
CTTAGTGGAGCTGACGGAGGAGATTCTCAAGCTGCTGATGGACCTGGTGTTCCGGCTGGTCTGCAATGGGGAGCTGAGCCTCGCCAGAGTGCTGCGCAAAAACATCCTGGACAAAGTGGATCAGAAGAAGATGTTGAGATACGCCAACTCCATCAAACCTCTCGCAGCCCGCGGGGTGGCAGCCAG
Seq C2 exon
GCCGGGCACCTTGCATGATTTCCACAGTCATGAAATAGCCGAGCAGCTGACACTCTTAGATGCTGAACTCTTCTATAAAATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003712-'29-23,'29-22,30-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=FE(35.0=100)
A:
PF0061815=RasGEF_N=PD(16.0=25.4)
C2:
PF0061714=RasGEF=PU(12.9=79.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCAACATATGAGAAGTTTTGC
R:
CTCGATTTTATAGAAGAGTTCAGCA
Band lengths:
187-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]