GgaEX6015268 @ galGal3
Exon Skipping
Gene
ENSGALG00000003712 | RAPGEF1
Description
NA
Coordinates
chr17:6874561-6875293:-
Coord C1 exon
chr17:6875108-6875293
Coord A exon
chr17:6874866-6874950
Coord C2 exon
chr17:6874561-6874655
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCATCTTTCTTTCCCGCAGGCC
3' ss Score
13.51
5' ss Seq
GAGGTACGG
5' ss Score
9.4
Exon sequences
Seq C1 exon
CTTAGTGGAGCTGACGGAGGAGATTCTCAAGCTGCTGATGGACCTGGTGTTCCGGCTGGTCTGCAATGGGGAGCTGAGCCTCGCCAGAGTGCTGCGCAAAAACATCCTGGACAAAGTGGATCAGAAGAAGATGTTGAGATACGCCAACTCCATCAAACCTCTCGCAGCCCGCGGGGTGGCAGCCAG
Seq A exon
GCCGGGCACCTTGCATGATTTCCACAGTCATGAAATAGCCGAGCAGCTGACACTCTTAGATGCTGAACTCTTCTATAAAATCGAG
Seq C2 exon
ATACCAGAAGTTTTGCTTTGGGCGAAAGAGCAAAATGAAGAGAAGAGCCCCAACCTGACGCAGTTCACAGAGCACTTTAATAACATGTCCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003712-'30-24,'30-23,31-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(16.0=25.4)
A:
PF0061714=RasGEF=PU(12.9=79.3)
C2:
PF0061714=RasGEF=FE(17.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGATGGACCTGGTGTTC
R:
CGCCCAAAGCAAAACTTCTGG
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]