RnoEX0073989 @ rn6
Exon Skipping
Gene
ENSRNOG00000014316 | Rapgef1
Description
Rap guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:619793]
Coordinates
chr3:8300227-8301158:+
Coord C1 exon
chr3:8300227-8300412
Coord A exon
chr3:8300842-8300926
Coord C2 exon
chr3:8301064-8301158
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTCTCATGCTGTGTTCCAGGCC
3' ss Score
9.04
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CCTGGTGGAGCTGACAGAGGAGATCCTGAAGCTGCTGATGGAGCTAGTCTTCCGCCTAGTGTGCAGTGGAGAGCTCAGCTTGGCCAGGGTACTCCGAAAGAACATTCTGGACAAGGTGGACCAGAAGAAGCTGCTCAGGTGTGCCCATTCCGACCAGCCTTTGGCAGCCAGGGGTGTTGCAGCCAG
Seq A exon
GCCAGGAACCTTGCATGATTTCCACAGCCACGAGATAGCTGAACAGCTGACACTGCTGGATGCCGAGCTTTTCTATAAGATAGAG
Seq C2 exon
ATTCCCGAAGTTTTGCTTTGGGCCAAAGAGCAGAATGAAGAGAAGAGCCCCAATCTGACCCAGTTCACAGAGCACTTCAACAACATGTCCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014316-'48-43,'48-41,49-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF0061815=RasGEF_N=PD(18.4=28.6)
A:
PF0061714=RasGEF=PU(12.9=79.3)
C2:
PF0061714=RasGEF=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGGTACTCCGAAAGAAC
R:
TGCTCTGTGAACTGGGTCAGA
Band lengths:
178-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]