MmuEX6100139 @ mm9
Exon Skipping
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29872718-29875567:+
Coord C1 exon
chr2:29872718-29872822
Coord A exon
chr2:29873882-29874090
Coord C2 exon
chr2:29875447-29875567
Length
209 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTGTCCTTGCCCTAGGAT
3' ss Score
10.79
5' ss Seq
CAAGTGCGT
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTGGAGGCTCTCCTGGCATCGGAAGATTATGGCAAAGACCTGGCTTCTGTGAACAACTTGCTGAAAAAGCATCAGCTGCTAGAGGCAGACATCTCGGCCCACGAG
Seq A exon
GATCGTCTGAAGGACCTGAACAGCCAGGCTGACAGCCTGATGACTAGCAGTGCCTTCGACACCTCCCAAGTGAAAGAGAAGCGGGACACCATCAATGGACGCTTCCAGAAGATCAAGAGCATGGCCACCTCCCGAAGAGCGAAACTGAGCGAGTCCCACCGCCTGCACCAGTTCTTCCGGGACATGGACGACGAGGAGTCCTGGATCAA
Seq C2 exon
GGAGAAGAAGTTGTTAGTGAGCTCTGAGGACTATGGCAGAGACCTCACTGGTGTTCAGAATCTGAGGAAGAAACACAAGCGGCTAGAAGCTGAACTGGCTGCACATGAACCCGCCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'49-51,'49-50,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.073
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(32.4=100)
A:
PF0043516=Spectrin=PD(47.6=71.4),PF0043516=Spectrin=PU(16.2=24.3)
C2:
PF0043516=Spectrin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTCCTGGCATCGGAAG
R:
CTGAATGGCGGGTTCATGTGC
Band lengths:
221-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: