BtaEX6046454 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99164912-99167650:+
Coord C1 exon
chr11:99164912-99165016
Coord A exon
chr11:99166326-99166534
Coord C2 exon
chr11:99167530-99167650
Length
209 bp
Sequences
Splice sites
3' ss Seq
TGCCGTGTCCCTGGCCCCAGGAC
3' ss Score
9.32
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGGAAGCCCTGCTGGCCTCTGAGGATTATGGCAAAGACCTGGCTTCTGTGAACAACTTGCTAAAAAAACATCAGCTGCTGGAGGCAGATATCTCTGCCCACGAG
Seq A exon
GACCGCCTGAAGGACCTCAACAGCCAGGCGGACAGCCTGATGACCAGCAGCGCCTTCGACACCTCCCAGGTGAAGGACAAGCGGGACGCCATCAACGGCCGTTTCCAGAAGATCAAGAGCATGGCCGCCTCGAGGCGAGCTAGGCTGAATGAGTCCCACCGCCTGCACCAGTTTTTCCGGGACATGGATGATGAGGAGTCCTGGATCAA
Seq C2 exon
GGAAAAGAAGCTGCTGGTGAGCTCAGAGGACTACGGCCGTGACCTGACGGGCGTCCAGAACCTGAGGAAGAAGCACAAACGGCTGGAAGCAGAGCTGGCTGCCCACGAGCCGGCCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327-'44-49,'44-46,45-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.073
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(32.4=100)
A:
PF0043516=Spectrin=PD(47.6=71.4),PF0043516=Spectrin=PU(16.2=24.3)
C2:
PF0043516=Spectrin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCTGAGGATTATGGCA
R:
CTGAATGGCCGGCTCGTG
Band lengths:
213-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]