GgaEX6015082 @ galGal3
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5800840-5802268:+
Coord C1 exon
chr17:5800840-5800944
Coord A exon
chr17:5801156-5801364
Coord C2 exon
chr17:5802148-5802268
Length
209 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTCCACATTTCCAGGAT
3' ss Score
9.44
5' ss Seq
CAAGTGTGT
5' ss Score
3.84
Exon sequences
Seq C1 exon
GTGGAAGCTTTGTTGGCATCTGAAGACTATGGGAAGGACTTGGCATCAGTGAACAACCTTCTGAAGAAGCACCAATTACTGGAAGCTGATATATCTGCTCATGAG
Seq A exon
GATCGGCTGAAGGACCTGAACAGCCAGGCTGACAGTTTGATGACCAGCAGTGCTTTCGATACCTCCCAAGTAAAGGATAAACGTGAAACTATAAATGGGCGCTTCCAGAGAATCAAGAGCATGGCAGCTGCCCGCCGTGCGAAGCTCAACGAGTCGCACCGCTTGCATCAGTTCTTCCGTGACATGGATGATGAGGAGTCCTGGATCAA
Seq C2 exon
AGAGAAGAAACTGTTGGTGAGCTCAGAGGACTATGGCAGAGACCTGACTGGTGTGCAGAACCTGAGGAAGAAACATAAGCGCTTGGAAGCAGAATTAGCTGCCCATGAACCTGCTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-'46-53,'46-52,47-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.098 C2=0.073
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(32.4=100)
A:
PF0043516=Spectrin=PD(47.6=71.4),PF0043516=Spectrin=PU(16.2=24.3)
C2:
PF0043516=Spectrin=FE(38.1=100),PF136751=PilJ=PU(33.3=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGCTTTGTTGGCATCTGA
R:
GGATAGCAGGTTCATGGGCAG
Band lengths:
223-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]