RnoEX0085732 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8585788-8589420:+
Coord C1 exon
chr3:8585788-8585892
Coord A exon
chr3:8587701-8587909
Coord C2 exon
chr3:8589300-8589420
Length
209 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTGTGCCTGCCCCAGGAT
3' ss Score
8.55
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTGGAGGCTCTCCTGGCATCTGAAGACTACGGCAAAGACCTGGCTTCCGTGAACAACCTGCTCAAAAAGCATCAGCTGCTGGAGGCAGACATATCGGCCCACGAG
Seq A exon
GATCGTCTGAAGGACCTGAACAGCCAGGCTGACAGCCTGATGACTAGCAGTGCCTTCGACACCTCCCAAGTGAAAGAGAAGCGGGACACCATCAATGGACGCTTTCAGAAGATCAAGAGCATGGCAACCTCCCGAAGAGCAAAACTGAGCGAGTCCCATCGCCTGCACCAGTTTTTCCGAGACATGGATGACGAGGAGTCCTGGATCAA
Seq C2 exon
GGAGAAGAAGTTGTTAGTGAGCTCTGAGGACTATGGCAGAGACCTCACTGGTGTTCAAAATCTGAGGAAGAAACACAAGCGGCTAGAAGCCGAACTGGCCGCACACGAACCAGCCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396-'70-75,'70-72,72-75
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.157 C2=0.073
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(32.4=100)
A:
PF0043516=Spectrin=PD(47.6=71.4),PF0043516=Spectrin=PU(16.2=24.3)
C2:
PF0043516=Spectrin=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCCTGGCATCTGAAGAC
R:
CTGAATGGCTGGTTCGTGTGC
Band lengths:
220-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]