MmuEX6100151 @ mm10
Exon Skipping
Gene
ENSMUSG00000057738 | Sptan1
Description
spectrin alpha, non-erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:30003674-30006670:+
Coord C1 exon
chr2:30003674-30003697
Coord A exon
chr2:30004505-30004540
Coord C2 exon
chr2:30006623-30006670
Length
36 bp
Sequences
Splice sites
3' ss Seq
AGCTCTCCTTCTTTGACTAGGAT
3' ss Score
8.43
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGGTGTATGGTGCGATGCCCAGG
Seq A exon
GATGAAGCAGATTCCAAGACGGCCTCCCCATGGAAG
Seq C2 exon
TCTGCTCGACTGATGGTCCATACAGTGGCTACCTTCAACTCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'62-53,'62-52,64-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.917 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(2.4=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGTATGGTGCGATGCC
R:
CTTGATGGAGTTGAAGGTAGCCA
Band lengths:
72-108
Functional annotations
There are 1 annotated functions for this event
PMID: 9712874
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, cleavage reaction, glutathione s tranferase tag, western blot. ELM ID: ELMI001909; ELM sequence: DETDS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types