GgaEX1055255 @ galGal3
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5792778-5794268:+
Coord C1 exon
chr17:5792778-5792801
Coord A exon
chr17:5793128-5793163
Coord C2 exon
chr17:5794221-5794268
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTCTTCACATTTTTAAACAGGAT
3' ss Score
9.16
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAAGTCTATGGAATGATGCCCAGA
Seq A exon
GATGAAACTGATTCTAAGACAGCCTCTCCTTGGAAG
Seq C2 exon
TCTGCACGTATGATGGTACACACAGTGGCAACGTTTAACTCAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(1.2=12.5)
A:
NO
C2:
PF0043516=Spectrin=PU(28.1=56.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCTATGGAATGATGCCCAGA
R:
CTTGATTGAGTTAAACGTTGCCACT
Band lengths:
72-108
Functional annotations
There are 1 annotated functions for this event
PMID: 9712874
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, cleavage reaction, glutathione s tranferase tag, western blot. ELM ID: ELMI001909; ELM sequence: DETDS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]