BtaEX6046466 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99154239-99156959:+
Coord C1 exon
chr11:99154239-99154262
Coord A exon
chr11:99154805-99154840
Coord C2 exon
chr11:99156912-99156959
Length
36 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTTTTCTTCAAACAGGAT
3' ss Score
11.48
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAGGTGTATGGCGCGATGCCCAGG
Seq A exon
GATGAATCTGATTCCAAGACAGCCTCCCCTTGGAAG
Seq C2 exon
TCTGCTCGCCTGATGGTTCACACCGTGGCCACCTTTAATTCCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327-'30-33,'30-32,31-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.917 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(2.4=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGTATGGCGCGATGC
R:
CTTGATGGAATTAAAGGTGGCCAC
Band lengths:
72-108
Functional annotations
There are 1 annotated functions for this event
PMID: 9712874
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, cleavage reaction, glutathione s tranferase tag, western blot. ELM ID: ELMI001909; ELM sequence: DETDS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]