BtaEX0034476 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99154805-99157774:+
Coord C1 exon
chr11:99154805-99154840
Coord A exon
chr11:99156912-99156959
Coord C2 exon
chr11:99157683-99157774
Length
48 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCCCTCCCCACATAGTCT
3' ss Score
8.55
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATGAATCTGATTCCAAGACAGCCTCCCCTTGGAAG
Seq A exon
TCTGCTCGCCTGATGGTTCACACCGTGGCCACCTTTAATTCCATCAAG
Seq C2 exon
GAGCTGAACGAGCGCTGGCGGTCCCTGCAGCAGCTGGCTGAGGAGCGGAGCCAACTCTTGGGCAGTGCCCATGAAGTGCAGCGGTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.000 C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(6.7=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGATTCCAAGACAGCCTCC
R:
CTGTGGAACCGCTGCACTTC
Band lengths:
124-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development