MmuEX0044719 @ mm10
Exon Skipping
Gene
ENSMUSG00000057738 | Sptan1
Description
spectrin alpha, non-erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:30004505-30007585:+
Coord C1 exon
chr2:30004505-30004540
Coord A exon
chr2:30006623-30006670
Coord C2 exon
chr2:30007494-30007585
Length
48 bp
Sequences
Splice sites
3' ss Seq
TCTATGCTCTCCTCTCACAGTCT
3' ss Score
9.27
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATGAAGCAGATTCCAAGACGGCCTCCCCATGGAAG
Seq A exon
TCTGCTCGACTGATGGTCCATACAGTGGCTACCTTCAACTCCATCAAG
Seq C2 exon
GAGCTGAATGAGCGTTGGCGGTCCCTGCAACAGCTGGCTGAGGAACGTAGCCAGCTCTTGGGCAGTGCACACGAAGTACAGAGGTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'64-54,'64-53,66-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(6.7=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAGATTCCAAGACGGC
R:
TGTGAAACCTCTGTACTTCGTGTG
Band lengths:
125-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types