DreEX0074859 @ danRer10
Exon Skipping
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13087085-13089267:+
Coord C1 exon
chr21:13087085-13087120
Coord A exon
chr21:13087349-13087396
Coord C2 exon
chr21:13089176-13089267
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATTTATCCAACTCAATATAGTCT
3' ss Score
3.17
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATGAAGCAGACTCCAAAGGTGCATCTCCATGGAAG
Seq A exon
TCTGTTCGCTTGGCTGTTCAAACAACGGCCAACTTTAATACTATCAAG
Seq C2 exon
GAGCTGAACAACCGCTGGAGGTCTCTGCAGCAGCTGGCTGAAGACCGAAGCAACATGCTGGGCAGTGCTCACGAAGTTCAGAGGTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.062 C2=0.516
Domain overlap (PFAM):
C1:
PF0039314=6PGD=FE(9.5=100)
A:
PF0039314=6PGD=FE(12.9=100),PF097304=BicD=PU(8.8=81.2),PF0043516=Spectrin=PU(32.4=68.8)
C2:
PF0039314=6PGD=FE(25.9=100),PF097304=BicD=FE(20.3=100),PF0043516=Spectrin=PD(61.8=67.7),PF0043516=Spectrin=PU(6.7=22.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGACTCCAAAGGTGCA
R:
TGTGGAACCTCTGAACTTCGTG
Band lengths:
124-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]