GgaEX1055269 @ galGal4
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5166316-5168196:+
Coord C1 exon
chr17:5166316-5166351
Coord A exon
chr17:5167409-5167456
Coord C2 exon
chr17:5168105-5168196
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGACTTTTCACACAGTCT
3' ss Score
6.86
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GATGAAACTGATTCTAAGACAGCCTCTCCTTGGAAG
Seq A exon
TCTGCACGTATGATGGTACACACAGTGGCAACGTTTAACTCAATCAAG
Seq C2 exon
GAACTGAATGAACGCTGGAGATCCCTGCAGCAGTTGGCAGAGGAGCGAAGCCAGCTGTTGGGCAGCGCTCATGAAGTCCAGAGGTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.062 C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(6.7=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGATTCTAAGACAGCCTCTCC
R:
CTGTGGAACCTCTGGACTTCA
Band lengths:
124-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]