GgaEX1055269 @ galGal3
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
NA
Coordinates
chr17:5793128-5795008:+
Coord C1 exon
chr17:5793128-5793163
Coord A exon
chr17:5794221-5794268
Coord C2 exon
chr17:5794917-5795008
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATTTCTGACTTTTCACACAGTCT
3' ss Score
6.86
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GATGAAACTGATTCTAAGACAGCCTCTCCTTGGAAG
Seq A exon
TCTGCACGTATGATGGTACACACAGTGGCAACGTTTAACTCAATCAAG
Seq C2 exon
GAACTGAATGAACGCTGGAGATCCCTGCAGCAGTTGGCAGAGGAGCGAAGCCAGCTGTTGGGCAGCGCTCATGAAGTCCAGAGGTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-'30-35,'30-34,31-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.062 C2=0.344
Domain overlap (PFAM):
C1:
NO
A:
PF0043516=Spectrin=PU(28.1=56.2)
C2:
PF0043516=Spectrin=PD(65.6=67.7),PF0043516=Spectrin=PU(15.6=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGATTCTAAGACAGCCTCTCC
R:
CTGTGGAACCTCTGGACTTCA
Band lengths:
124-172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]