RnoEX0085722 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8574275-8576542:+
Coord C1 exon
chr3:8574275-8574310
Coord A exon
chr3:8575425-8575472
Coord C2 exon
chr3:8576451-8576542
Length
48 bp
Sequences
Splice sites
3' ss Seq
CCTATGCTCTCCTCTCACAGTCT
3' ss Score
9
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GATGAAGCAGATTCCAAGACCGCCTCCCCATGGAAG
Seq A exon
TCTGCTCGACTGATGGTCCACACAGTGGCCACCTTCAACTCCATCAAG
Seq C2 exon
GAGCTGAATGAGCGCTGGCGGTCCCTGCAACAGCTGGCTGAGGAACGTAGCCAGCTCCTGGGCAGTGCACACGAAGTACAGAGGTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396-'50-54,'50-53,51-54
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=0.030 C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(6.7=22.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCAGATTCCAAGACCGC
R:
TGTGGAACCTCTGTACTTCGTG
Band lengths:
125-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]