MmuEX6101009 @ mm10
Exon Skipping
Gene
ENSMUSG00000035236 | Scai
Description
suppressor of cancer cell invasion [Source:MGI Symbol;Acc:MGI:2443716]
Coordinates
chr2:39066214-39080547:-
Coord C1 exon
chr2:39080374-39080547
Coord A exon
chr2:39080077-39080177
Coord C2 exon
chr2:39066214-39075156
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGTTGCTTCCTCTCTGCAGATC
3' ss Score
12.57
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
Exon sequences
Seq C1 exon
ATCAGTCTCAGCGAGGTAGCCTCTTCACGCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTGTCTGGATTGTCAAGCATGCGTAGAGGCCTGTGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATATTGCCCAGCTACTGACCCATTCACGTTCAATAG
Seq A exon
ATCAGGCCTTCCTCCAGTTTTTTGGAGATGAATTTCTTCGATTGCTTCTCACAAGGTTTGTCTTCTGTTCAGCCACCATGAGGATGCACAAGGCCTTTCGG
Seq C2 exon
GAAACGCGAAATTACCCAGAATCCTATCCACAACTGCCAAGGGATGAAACCGTAGAGAATCCTCACCTTCAGAAGCACATTTTGGAATTGGCCTCCATTCTGGATGTTCGAAACATCTTCTTTGAGAATTCTATGGATGACTATTAAAACCCTCTTGTTTAACAGTTTTTCATTTTCCACAGATTTTAAATGGTGCAATTTTTTAATGTAATGACATAGTGTGTTACTTGGTTTTTATTTTTGGATTTAGGAAACACCATTTTAAAAGCAAACTGAAAAAAGTTCAAACTTTTAGGGTAACTTTTAAAATATAATCTTTCAAGTCTTTTAAATTCTCAATCTTGAAATTTTTATTTTTTTGGTCTTGGCATTAGATACTTACCTCCAACATCTACCCCCACATTCAAATAGTTACTGTTGTCACCTTAAGAAGAACATATATTGTTTATTTTTCCATAATGAGGACAATCCATAAGTTAAACTTGGACCTGGAAGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035236-'34-33,'34-31,36-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(11.7=100)
A:
PF120703=DUF3550=FE(6.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAGCCTCTTCACGCTCTT
R:
GGAGGCCAATTCCAAAATGTGC
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types