DreEX0064319 @ danRer10
Exon Skipping
Gene
ENSDARG00000060865 | scai
Description
suppressor of cancer cell invasion [Source:ZFIN;Acc:ZDB-GENE-060526-57]
Coordinates
chr5:31442493-31446144:+
Coord C1 exon
chr5:31442493-31442666
Coord A exon
chr5:31443835-31443935
Coord C2 exon
chr5:31445998-31446144
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTGACTCTCTTCCAGATC
3' ss Score
10.45
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
ACCAGTCTCAGCGTGGGAGTCTGTTTACTCTCTTCCTTTACAACCCCCTCATGGGCTTCCTATCTGTCTGTGGACTGAGCAGCATGCGTTATGGATTGTGGGAAAAAGCCCAGGAACTCCTGCGGAAGGTTTTCCATGACATTGGCCAGATGATCACAAGTTCACGAGTTATAG
Seq A exon
ATCAGGCGTATCTGCAGTTTTATGGTGATGAGTTTCTGCGTCTGCTTATGATCCGCTTCGTGTTCTGCTCCTCCGCGCTCCGGTTACACAAGCTCTTCCGG
Seq C2 exon
GAAGCGAGGAGTTTTCCAGAATCGTATCCCCCTCTGCCAAAACAGGAGATGGTGGAGAGCAGCCTTCTACAGAAACATGTGCTGGAGCTGGCGGCTATGCTGGACGTGCAAAACCTCTTTTCCGATGGCATGCTGGATAACTATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060865-'18-22,'18-20,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(11.7=100)
A:
PF120703=DUF3550=FE(6.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGGACTGAGCAGCATG
R:
AGCATGCCATCGGAAAAGAGG
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]