HsaEX0011613 @ hg19
Exon Skipping
Gene
ENSG00000173611 | C9orf126
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:26709]
Coordinates
chr9:127714380-127734123:-
Coord C1 exon
chr9:127733950-127734123
Coord A exon
chr9:127733649-127733749
Coord C2 exon
chr9:127714380-127715232
Length
101 bp
Sequences
Splice sites
3' ss Seq
CACTTTTCTCCTCTTTGCAGATC
3' ss Score
12.56
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
Exon sequences
Seq C1 exon
ATCAATCTCAGCGAGGTAGCCTCTTCACTCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTCTCTGGATTGTCAAGCATGCGCAGAGGCCTATGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATATTGCCCAGCTACTGACTCATTCACGTTCAATAG
Seq A exon
ATCAGGCATTTCTCCAGTTTTTTGGAGATGAATTTCTTCGCTTGCTCCTCACAAGATTTATCTTTTGTTCAGCCACCATGAGGATGCACAAGATTTTTCGG
Seq C2 exon
GAAACACGAAATTATCCAGAATCATATCCACAACTGCCAAGGGATGAAACAGTGGAGAATCCTCATCTCCAGAAGCACATTTTGGAATTAGCATCCATTCTGGATGTTCGAAACGTGTTCTTTGAGAATACCATTGATGACTATTAAAACAAAAACCCTGTTGTCGAAACAAGTTTTCATTTTCCACAAATTTTAAATGGTGCAGTTTTCTAACGTGATAAGACACATAGTGGTGTTACTTAGTTTTTATTTTTTAATTTAGGGCCACCATTTTAAAAACAAACAAAAAAATGTTCACACTTTTAGGGTAACTGTTTTAAAATGCAACCTTTCAGGTCTTTTAAAATCTTAACCTTGGAATTTTTATTTTTTGATTTTGAGGGATGGATATTTACCTCCAACTTCTAATCCTACACTCAAATAGTCACTATTCTCACCCTGAGAAGAGTAAATCATTTATTTTTGTATAATGAGGTAAATCCAACTCTTATACTTGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(11.7=100)
A:
PF120703=DUF3550=FE(6.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATCTCAGCGAGGTAGCCT
R:
TGGAGATGAGGATTCTCCACTGT
Band lengths:
244-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)