RnoEX0078280 @ rn6
Exon Skipping
Gene
ENSRNOG00000025278 | Scai
Description
suppressor of cancer cell invasion [Source:RGD Symbol;Acc:1594720]
Coordinates
chr3:23362707-23367623:-
Coord C1 exon
chr3:23367450-23367623
Coord A exon
chr3:23367152-23367252
Coord C2 exon
chr3:23362707-23363051
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCTTCCTCTCTGCAGATC
3' ss Score
13.17
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
Exon sequences
Seq C1 exon
ATCAGTCTCAGCGAGGTAGCCTCTTCACGCTCTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTGTCTGGATTGTCAAGCATGCGTAGAGGCCTGTGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGATATTGCCCAGCTACTGACCCATTCACGTTCAATAG
Seq A exon
ATCAGGCCTTCCTCCAGTTTTTTGGAGATGAATTTCTTCGATTGCTTCTCACAAGGTTTGTCTTCTGTTCAGCCACCATGAGGATGCATAAGGCCTTTCGG
Seq C2 exon
GAAACTCGAAATTACCCAGAATCCTATCCACAACTGCCAAGGGATGAAACTGTGGAGAATCCTCACCTTCAGAAGCACATTTTGGAATTGGCCTCCATTCTGGATGTTCGAAACATCTTCTTTGAGAATTCTATGGATGACTATTAAACCCTCCTGTTTAACAGTTTTTCATTTTCCACAGATTTTAAATGGTGCAGTTTTTTAATGTAATGACAGAGACATAGTGTGTTACTTGGTTTTTATTTTTGGATTTAGGAACCACCATTTTAAAAGCAAACTGAAAAAAAAGTTCAAACTTTTAGGGTAACTTTTAAAATATAATCTTTCAAGTCTTTTAAAGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025278-'32-30,'32-28,34-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.125
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(11.7=100)
A:
PF120703=DUF3550=FE(6.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTAGCCTCTTCACGCTCTT
R:
GGAGGCCAATTCCAAAATGTGC
Band lengths:
257-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]