GgaEX1050996 @ galGal4
Exon Skipping
Gene
ENSGALG00000001037 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr17:9556501-9563659:+
Coord C1 exon
chr17:9556501-9556674
Coord A exon
chr17:9556877-9556977
Coord C2 exon
chr17:9558051-9563659
Length
101 bp
Sequences
Splice sites
3' ss Seq
GCCTTTTTTTTTTTTTATAGATC
3' ss Score
11.48
5' ss Seq
CGGGTATGC
5' ss Score
7.73
Exon sequences
Seq C1 exon
ATCAGTCTCAGCGGGGTAGCCTCTTCACACTCTTTCTGAACAATCCTTTAATGGCATTCCTATTTGTCTCTGGATTATCAAGCATGCGCAGAGGACTGTGGGAGAAGTGTCAAGATTACCTCAGAAAAATCAATCGAGATATTGCGCAGCTGCTGACCCACTCCCGCTCCATAG
Seq A exon
ATCAATCATTTCTTCAGTTTTTTGGGGATGAATTTCTTCGTTTGCTTCTAACGAGATTTATCTTCTGTTCAGCTACTATGAGGATGCACAAAATTTTCCGG
Seq C2 exon
CAGGAAACACGAAATTATCCAGAGTCTTATCCTCAGCTGCCAAGAGATGAAACGGTGGAGAACCCTCACCTCCAAAAGCACATTTTGGAGCTGGCTTCCATACTGGATGTTAGAAATGTTTTCCTGGAAAACACTCTTGACGACTATTAAGAAAAACTGTCTTACTGCAAAGGGGTTTCCCTGGCCACAGATTTTGAATGGTGCAGTTTTCTAATGTGAAAATCATAAAAGGAAGTACTTGATTTTATTTTTAAACTTAGGACCATTATTTTAAAAAGTAATAATAAACAGCTGTTAGGTTAGCTGTTCCATTCTGTATGGGGGGGTCAATTTTGTAAGAAGTTTTCATGTCTTTTAAATGTTAAACTAAAGAATTGCTAGAGGTTTATTTCTGGTCTTGTGGCTGTCAACCACATTTCCAACAGCTGATCCTAAGCATAGAAGTATTATTGGTTACCTTTATCCCACATTTGTGGAAATCCTTTATTTTTATACAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001037_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(11.6=100)
A:
PF120703=DUF3550=FE(6.6=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTAGCCTCTTCACACTCT
R:
AGCCAGCTCCAAAATGTGCTT
Band lengths:
258-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]