BtaEX0031456 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015553 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr11:95925113-95938537:-
Coord C1 exon
chr11:95938364-95938537
Coord A exon
chr11:95938074-95938174
Coord C2 exon
chr11:95925113-95925259
Length
101 bp
Sequences
Splice sites
3' ss Seq
CACTTTTCTCCTTTTTGCAGATC
3' ss Score
12.07
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
Exon sequences
Seq C1 exon
ATCAATCTCAACGAGGTAGCCTGTTCACTCTGTTTTTGAACAATCCTCTAATGGCCTTCCTATTTGTCTCTGGACTGTCAAGCATGCGTAGAGGCCTATGGGAAAAGTGTCAAGAATATCTTCGAAAAATCAACCGTGACATTGCCCAGCTACTGACCCATTCACGTTCAATAG
Seq A exon
ATCAGGCATTTCTCCAGTTTTTTGGAGATGAATTTCTTCGCTTGCTTCTCACGAGATTTATCTTTTGTTCAGCCACCATGAGGATGCACAAGATTTTTCGG
Seq C2 exon
GAAACACGGAATTATCCAGAATCATATCCACAGCTGCCAAGGGATGAAACAGTGGAGAACCCTCATCTCCAGAAGCACATTTTGGAATTAGCATCCATTCTGGATGTGCGAAACGTGTTCCTTGAGAATACCATAGACGACTATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015553-'24-22,'24-20,25-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(11.7=100)
A:
PF120703=DUF3550=FE(6.7=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGGTAGCCTGTTCACTCT
R:
TGTGCTTCTGGAGATGAGGGT
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development