MmuEX6101355 @ mm9
Exon Skipping
Gene
ENSMUSG00000061136 | Prpf40a
Description
PRP40 pre-mRNA processing factor 40 homolog A (yeast) [Source:MGI Symbol;Acc:MGI:1860512]
Coordinates
chr2:53018592-53034066:-
Coord C1 exon
chr2:53034050-53034066
Coord A exon
chr2:53019810-53019920
Coord C2 exon
chr2:53018592-53018712
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTAATAATTTTTCCCTTTAGAAA
3' ss Score
9.99
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTGCAGCATCTGGTGCA
Seq A exon
AAATCAATGTGGACAGAACATAAATCACCTGATGGAAGGACTTATTATTACAATACTGAAACAAAACAGTCTACCTGGGAAAAGCCAGATGATCTTAAAACACCTGCTGAG
Seq C2 exon
CAACTATTGTCTAAATGCCCATGGAAAGAGTACAAATCTGATTCCGGGAAGCCTTATTACTATAATTCTCAAACAAAGGAGTCCCGCTGGGCCAAACCTAAGGAACTTGAAGATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061136-'13-8,'13-7,17-8=AN
Average complexity
A_S
Mappability confidence:
91%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.775 C2=0.561
Domain overlap (PFAM):
C1:
PF0039721=WW=PU(0.1=0.0)
A:
PF0039721=WW=PD(93.3=75.7)
C2:
PF0039721=WW=WD(100=73.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: