GgaEX6043328 @ galGal4
Exon Skipping
Gene
ENSGALG00000012526 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr7:35060669-35061531:-
Coord C1 exon
chr7:35061454-35061531
Coord A exon
chr7:35061240-35061350
Coord C2 exon
chr7:35060669-35060798
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTTTAATTTTCCTAGAAA
3' ss Score
6.06
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
ACAACGCATCCCGTGGTTTGTGCAGCTCAGCAAACAGCCACAACCAACAGTTCAGGCAGTGAGGAGCACTCTAAACAG
Seq A exon
AAATCGACGTGGACGGAACACAAATCACCTGATGGAAGAACCTATTACTACAACACTGAAACAAAGCAGTCCACGTGGGAGAAGCCAGATGATCTTAAAACACCTGCTGAG
Seq C2 exon
CAATTGCTGTCTAAGTGCCCCTGGAAAGAGTACAAATCTGATTCTGGAAAGCCATACTACTATAATTCCCAAACAAAGGAATCACGCTGGGCAAAACCCAAAGAACTCGAAGACCTGGAAGGTAACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.771
Domain overlap (PFAM):
C1:
PF0039721=WW=PU(0.1=0.0)
A:
PF0039721=WW=PD(93.3=75.7)
C2:
PF0039721=WW=WD(100=68.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCGTGGTTTGTGCAGC
R:
CCTTCCAGGTCTTCGAGTTCT
Band lengths:
194-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]