DreEX0058623 @ danRer10
Exon Skipping
Gene
ENSDARG00000058467 | prpf40a
Description
PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-274]
Coordinates
chr9:4720818-4726383:+
Coord C1 exon
chr9:4720818-4720862
Coord A exon
chr9:4723722-4723832
Coord C2 exon
chr9:4726263-4726383
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTTCATAATATCTCCTACAGAAG
3' ss Score
5.51
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
AGCACCACATCAACCGAGTCTTCACCTGATGAACAGCCAAAAAAG
Seq A exon
AAGTCAGTGTGGACCGAGCACAAATCTCTGGATGGAAAAATATACTACTACAACACAGAGACCAAACAATCCACCTGGGAGAAACCAGATGAACTCAAATCACCCGCAGAG
Seq C2 exon
CAAATGTTGTCAAAATGCCCATGGAAAGAGTATAAGTCAGACACCGGAAAGCCCTATTACTATAACTCCCAGACCAAAGAGTCTCGCTGGACTAAACCCAAAGAACTGGAGGACCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058467_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.568 C2=0.829
Domain overlap (PFAM):
C1:
NO
A:
PF0039721=WW=WD(100=78.4)
C2:
PF0039721=WW=WD(100=73.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCACATCAACCGAGTCTT
R:
CCAGGTCCTCCAGTTCTTTGG
Band lengths:
162-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]