MmuEX6103019 @ mm10
Exon Skipping
Gene
ENSMUSG00000027249 | F2
Description
coagulation factor II [Source:MGI Symbol;Acc:MGI:88380]
Coordinates
chr2:91625702-91628833:-
Coord C1 exon
chr2:91628660-91628833
Coord A exon
chr2:91628322-91628403
Coord C2 exon
chr2:91625702-91625772
Length
82 bp
Sequences
Splice sites
3' ss Seq
TACAGCCCAGCGTCCTGCAGGTG
3' ss Score
2.5
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
ATATGAGCGGAATGTTGAAAAGATCTCCATGCTGGAAAAGATCTACGTCCACCCCAGATATAACTGGCGGGAGAACCTAGACCGCGATATCGCTCTGCTCAAGCTAAAGAAACCTGTACCCTTCAGTGACTATATTCACCCCGTGTGTTTGCCAGACAAGCAGACAGTAACCAG
Seq A exon
GTGGTGAACCTGCCCATTGTAGAGCGGCCAGTGTGCAAGGCCTCCACCCGGATTCGAATTACTGACAACATGTTCTGTGCTG
Seq C2 exon
GCTTCAAGGTGAATGACACCAAGCGAGGAGATGCTTGTGAAGGTGACAGTGGAGGACCTTTTGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027249-'24-23,'24-22,25-23
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
PF0008921=Trypsin=FE(24.4=100)
C2:
PF0008921=Trypsin=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAACCTAGACCGCGATA
R:
AAAGGTCCTCCACTGTCACCT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types