MmuEX6103019 @ mm9
Exon Skipping
Gene
ENSMUSG00000027249 | F2
Description
coagulation factor II [Source:MGI Symbol;Acc:MGI:88380]
Coordinates
chr2:91465859-91468990:-
Coord C1 exon
chr2:91468817-91468990
Coord A exon
chr2:91468479-91468660
Coord C2 exon
chr2:91465859-91465929
Length
182 bp
Sequences
Splice sites
3' ss Seq
GTCCTTCTCTCTCCCTAAAGCTT
3' ss Score
9.77
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
ATATGAGCGGAATGTTGAAAAGATCTCCATGCTGGAAAAGATCTACGTCCACCCCAGATATAACTGGCGGGAGAACCTAGACCGCGATATCGCTCTGCTCAAGCTAAAGAAACCTGTACCCTTCAGTGACTATATTCACCCCGTGTGTTTGCCAGACAAGCAGACAGTAACCAG
Seq A exon
CTTGCTCCGGGCTGGTTATAAAGGGCGGGTGACAGGCTGGGGCAACCTTCGGGAGACATGGACAACCAACATCAATGAGATACAGCCCAGCGTCCTGCAGGTGGTGAACCTGCCCATTGTAGAGCGGCCAGTGTGCAAGGCCTCCACCCGGATTCGAATTACTGACAACATGTTCTGTGCTG
Seq C2 exon
GCTTCAAGGTGAATGACACCAAGCGAGGAGATGCTTGTGAAGGTGACAGTGGAGGACCTTTTGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027249-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
PF0008921=Trypsin=FE(24.4=100)
C2:
PF0008921=Trypsin=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGGAATGTTGAAAAGATCT
R:
CTTCATGACAAAAGGTCCTCCACT
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: