RnoEX0033768 @ rn6
Exon Skipping
Gene
ENSRNOG00000016325 | F2
Description
coagulation factor II [Source:RGD Symbol;Acc:61996]
Coordinates
chr3:80529805-80534710:-
Coord C1 exon
chr3:80534537-80534710
Coord A exon
chr3:80534211-80534392
Coord C2 exon
chr3:80529805-80529875
Length
182 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTCTTTCCCTAAAGTTT
3' ss Score
8.45
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
ATATGAGCGGAATGTTGAAAAGATCTCCATGCTGGAAAAGATCTACATCCACCCCAGATATAACTGGCGGGAAAACCTAGACCGTGACATTGCTCTGCTCAAGCTAAAGAAGCCAGTGCCCTTCAGTGACTACATTCACCCCGTGTGCTTGCCAGACAAGCAGACAGTAACCAG
Seq A exon
TTTGCTCCAGGCTGGTTATAAAGGGCGGGTGACAGGCTGGGGCAACCTTCGGGAGACGTGGACAACTAACATCAACGAGATACAGCCCAGCGTCCTGCAGGTGGTGAACCTGCCCATTGTAGAGCGACCAGTGTGCAAGGCCTCTACCCGGATACGCATTACTGACAACATGTTCTGTGCTG
Seq C2 exon
GCTTCAAGGTGAATGACACCAAGCGAGGAGATGCTTGTGAAGGTGACAGTGGGGGACCTTTTGTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016325-'14-16,'14-14,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.2=100)
A:
PF0008921=Trypsin=FE(24.4=100)
C2:
PF0008921=Trypsin=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGGAATGTTGAAAAGATCT
R:
CTTCATGACAAAAGGTCCCCCA
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]