DreEX6006445 @ danRer10
Exon Skipping
Gene
ENSDARG00000036041 | f2
Description
coagulation factor II (thrombin) [Source:ZFIN;Acc:ZDB-GENE-030131-4606]
Coordinates
chr7:38485646-38488162:+
Coord C1 exon
chr7:38485646-38485819
Coord A exon
chr7:38487804-38487982
Coord C2 exon
chr7:38488092-38488162
Length
179 bp
Sequences
Splice sites
3' ss Seq
GATTTCTGTCTGTTTGTAAGTTT
3' ss Score
4.76
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
GTATGAGAGAGGCATCGAGAAGATTGTGGCCATTGATGAAATCATTGTCCACCCTAAATACAACTGGAAAGAAAACCTAAACCGAGACATTGCTCTTCTCCACATGAAGAAGCCTGTCGTTTTTACGAGTGAGATCCACCCTGTCTGTCTGCCCACCAAGAGCATTGCAAAGAA
Seq A exon
TTTGATGTTTGCAGGTTATAAGGGCCGTGTAACTGGCTGGGGGAACCTTCGGGAGTCTTGGACCTCAAACCCAACGAATCTCCCCACTGTGCTGCAACAGATTCACTTGCCCATTGTGGATCAGAGCATCTGCCGCAATTCCACCTCGGTCATCATCACCGACAACATGTTCTGTGCTG
Seq C2 exon
GTTACCAGCCTGATGATTCAAAAAGAGGTGACGCTTGTGAAGGAGACAGCGGAGGCCCCTTTGTGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036041-'16-17,'16-15,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.458
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.3=100)
A:
PF0008921=Trypsin=FE(24.1=100)
C2:
PF0008921=Trypsin=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGAGGCATCGAGAAGAT
R:
CTTCATCACAAAGGGGCCTCC
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]